allow platform from SRA: 'dnbseq'

fmalmeida · fmalmeida · commit f9fe16e807d7 · 2024-06-20T16:42:04.000Z
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -2,6 +2,10 @@
 
 The tracking for changes started in v2.2
 
+# v2.7.2
+
+* Adjust short-reads workflow filter to allow analysis from SRA for platform key-values: illumina, bgiseq and dnbseq
+
 ## v2.7.1
 
 * [[#36]](https://github.com/fmalmeida/ngs-preprocess/issues/36) - Include nf-tests to the pipeline.
diff --git a/main.nf b/main.nf
@@ -156,7 +156,7 @@ workflow {
   .filter{ it != '' }
   .mix( 
     SRA_FETCH.out.fastqs
-    .filter{ it[1] =~ /illumina|bgiseq/ }
+    .filter{ it[1] =~ /illumina|bgiseq|dnbseq/ }
     .map{ 
       def meta             = [:]
       meta.id              = it[0]
diff --git a/nextflow.config b/nextflow.config
@@ -92,5 +92,5 @@ manifest {
   homePage        = "https://github.com/fmalmeida/ngs-preprocess"
   mainScript      = "main.nf"
   nextflowVersion = ">=21.10.0"
-  version         = "2.7.1"
+  version         = "2.7.2"
 }

Original file line number	Diff line number	Diff line change
`@@ -92,5 +92,5 @@ manifest {`
`92`	`92`	`homePage = "https://github.com/fmalmeida/ngs-preprocess"`
`93`	`93`	`mainScript = "main.nf"`
`94`	`94`	`nextflowVersion = ">=21.10.0"`
`95`		`- version = "2.7.1"`
	`95`	`+ version = "2.7.2"`
`96`	`96`	`}`