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nucmer to identify large insertion/PAV for building linear pangenome

Status: Open.

#229 In mummer4/mummer;

· yongjiam opened on Jul 4, 2025

Nucmer runs without error but doesn't generate the SNPs for a particular chunk in the sequence

Status: Open.

#228 In mummer4/mummer;

· ankeetkumar opened on Jun 23, 2025

Interpreting negative SEQ length in show-diff

Status: Open.

#226 In mummer4/mummer;

· cedricblais opened on Mar 13, 2025

6 tests fail

Status: Open.

#224 In mummer4/mummer;

· yurivict opened on Feb 8, 2025

Build and test for Linux/ARM64

Status: Open.

#218 In mummer4/mummer;

· odidev opened on Nov 28, 2024

Please consider renaming bin/annotate since it conflicts with other packages

Status: Open.

#217 In mummer4/mummer;

· yurivict opened on Oct 31, 2024

Nucmer issue: taking forever or alignment very fragmented

Status: Open.

#214 In mummer4/mummer;

· BioJules opened on Jul 11, 2024

mummerplot chromosome is not sorted correctly

Status: Open.

#213 In mummer4/mummer;

· JeanQ2020 opened on Jun 13, 2024

mummerplot defined(%hash) issue

Status: Open.

#212 In mummer4/mummer;

· sheraghty opened on May 28, 2024

mummer4_Inappropriate ioctl for device

Status: Open.

#211 In mummer4/mummer;

· hjt1129 opened on May 22, 2024

terminate called after throwing an instance of 'std::length_error

Status: Open.

#208 In mummer4/mummer;

· fka21 opened on Mar 22, 2024

delta-filter no error and no results

Status: Open.

#198 In mummer4/mummer;

· 15132522078 opened on Jun 7, 2023