Analysis scripts for LSM module testing

database: https://ccdqc.pha.jhu.edu/QC_production/edit_module_underground.php

Module layout: copy from surface table

Preliminary Grade Assessment: leave to Alvaro or other reviewers

Testing:

• Test Time: ls -lt ~/Soft/ccd-cdaq/LSM_Module_Testing_Data/Production_Modules (use the timestamp of the first image)

• Temp: from SC at the first High/Low image

• sequencer and bcf files:

scp -r "daq2:~/Soft/ldaq/config/configfiles/TC_LSM_REF_DM01.bcf" ~/Code/LSM_Module_Testing_Analysis/Data/configfiles

scp -r "daq2:~/Soft/ldaq/config/seqfiles/refrence_v4_DM01.seq" ~/Code/LSM_Module_Testing_Analysis/Data/seqfiles

in ~/.zshrc (.bashrc), add:

alias adc_plotter="python3 /Users/iumicuszhu/Code/LSM_Module_Testing_Analysis/src/adc_plotter.py" alias pdf2plot="python3 /Users/iumicuszhu/Code/LSM_Module_Testing_Analysis/src/pdf_to_plot_dir.py"

Start by creating a folder named Production_Modules_Data

This will host all of the data for high and low temperature

for fz files:

scp -r "daq2:~/Soft/ccd-cdaq/LSM_Module_Testing_Data/Production_Modules/2025-08-05-DM01_DM02_DM03_High_Temp/avg*fz" ~/Code/LSM_Module_Testing_Analysis/Data/DM01_DM02_DM03_High_Temp

for trace/psd:

scp -r "daq2:~/Soft/ccd-cdaq/LSM_Module_Testing_Data/Production_Modules/2025-08-05-DM01_DM02_DM03_High_Temp/*.csv" ~/Code/LSM_Module_Testing_Analysis/Data/DM01_DM02_DM03_High_Temp

(run all the analysis scripts in this folder)

go into the folder: cd ~/Code/LSM_Module_Testing_Analysis/Data/DM01_DM02_DM03_High_Temp

• generate all the trace pdf images from the csv files: adc_plotter --trace --delta_t 10000 --fname trace*.csv

• combine the 4 channels image together to one, and (optional) delete the single pdf files: pdf2plot --files 'trace_ch*_110_*.pdf' DM04_trace --cleanup

• get reference image names ls -l trace*110_*.csv

• generate png files from .csv: adc_plotter --psd --fname psd*.csv

python3 ../../src/Image_1.py --files avg_Image_1_High_Temp_106_*.fz --module DM03

python3 ../../src/Image_2.py --files avg_Image_2_High_Temp_SR_106*.fz --module DM03

use Wader in daq2 computer, then download generated pdfs to local

cd <datafolder> mkdir temp cd temp setwadersACM

default: IsHighT = True (Is High DC = True in pedestal subtraction) is preferred

• panaSKImg "../avg_Image_3_500*.fz" -j ~/Soft/ccd-cdaq/LSM_Module_Testing_Scripts/Analysis/moduletest_hightemp_image_3_IsHighT.json -o . --acm --save-plots
• panaSKImg "../avg_Image_3_1000*.fz" -j ~/Soft/ccd-cdaq/LSM_Module_Testing_Scripts/Analysis/moduletest_hightemp_image_3_IsHighT.json -o . --acm --save-plots

if bad fit (usually 1000 skips image):

try: panaSKImg "../avg_Image_3_1000*.fz" -j ~/Soft/ccd-cdaq/LSM_Module_Testing_Scripts/Analysis/moduletest_hightemp_image_3_NotHighT.json -o . --acm --save-plots

download to local:

scp -r "daq2:~/Soft/ccd-cdaq/LSM_Module_Testing_Data/Production_Modules/2025-08-25-DM04_DM05_DM06_High_Temp/temp/*FitDarkCurrentProcess_DCfit*" ~/Code/LSM_Module_Testing_Analysis/Data/DM04_DM05_DM06_High_Temp

select the fit results to your liking (if similar, use the last set) per each module, each extension, delete the rest, and run: pdf2plot --files 'avg_Image_3_1000_*_SR_110_*.pdf' DM04_image32 --cleanup

Image_4.py now support wildcard match for --files

python3 ../../src/Image_4.py --files "avg_Image_4_High_Temp_*109_*.fz" --module DM13_Image4

cd <Module_data_set> mkdir Analysis mkdir Image_1;mkdir Image_2;mkdir Image_3;mkdir Image_4;

python scripts, these are used for images 1, 2, and 4 mainly for column defects.

cd Image_1 python src/Image_1.py --files Production_Modules_Data/<Module_data_set>/avg_Image_1_High_Temp_<ACM#>*_.fz --module

@@ -47,12 +50,13 @@ python src/Image_1.py --files Production_Modules_Data/<Module_data_set>/avg_Imag cd Image_4 python src/Image_1.py --files Production_Modules_Data/<Module_data_set>/avg_Image_2_High_Temp_<ACM#>*_.fz --module

cd <Module_data_set> mkdir Analysis mkdir Image_4;

python scripts, these are used for image 4 mainly for column defects, CTI, noise and sharpness of tracks

cd Image_4 python src/Image_1.py --files Production_Modules_Data/<Module_data_set>/avg_Image_2_High_Temp_<ACM#>*_.fz --module