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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 801 161

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 175 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 313 50

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 158 26

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 645 104

Repositories

Showing 10 of 381 repositories
  • cellpop Public
    hms-dbmi/cellpop’s past year of commit activity
    Jupyter Notebook 0 MIT 1 13 4 Updated Jul 31, 2025
  • ETL-MissionControl-dbgap-submodule Public

    ETL-MissionControl-dbgap-submodule

    hms-dbmi/ETL-MissionControl-dbgap-submodule’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jul 31, 2025
  • ETLToolSuite-EntityGenerator Public

    This tool will generate Entity Files that can be used to load into Datasources.

    hms-dbmi/ETLToolSuite-EntityGenerator’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Jul 31, 2025
  • avillachlab-jenkins Public
    hms-dbmi/avillachlab-jenkins’s past year of commit activity
    HCL 5 Apache-2.0 6 0 0 Updated Jul 31, 2025
  • pic-sure-search-prototype Public archive
    hms-dbmi/pic-sure-search-prototype’s past year of commit activity
    Java 0 Apache-2.0 1 0 0 Updated Jul 31, 2025
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Jul 31, 2025
  • pic-sure-gic-common-frontend Public
    hms-dbmi/pic-sure-gic-common-frontend’s past year of commit activity
    Java 0 Apache-2.0 3 0 11 Updated Jul 31, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 2 Updated Jul 31, 2025
  • udi-grammar Public

    The Universal Discovery Interface Grammar.

    hms-dbmi/udi-grammar’s past year of commit activity
    TypeScript 4 MIT 2 0 5 Updated Jul 31, 2025
  • pgab Public

    Pediatric Growth Assessment Benchmark

    hms-dbmi/pgab’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Jul 31, 2025
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